Plot DEICODE output with custom axis


(Gil Sharon) #1

Hello all (and @cmartino, @yoshiki specificlly)

Been playing with RPCA and wanted to use other emperor plotting options and ran into some trouble:
Is there a way to use qiime deicode rpca or qiime emperor plot to plot a PCA without the biplot, and/or with custom axes (metadata)?

I might have missed something, but qiime emperor plot isnt happy when I try to use the biplot output with a custom axis (no error, but the qzv doesnt load on QIIME2 View).

Thanks!
Gil


(Yoshiki Vázquez Baeza) #2

Thanks for catching this problem @Gil_Sharon, I’ve opened an issue in our tracker:

Should be fixed in the next release.