Been playing with RPCA and wanted to use other emperor plotting options and ran into some trouble:
Is there a way to use
qiime deicode rpca or
qiime emperor plot to plot a PCA without the biplot, and/or with custom axes (metadata)?
I might have missed something, but
qiime emperor plot isnt happy when I try to use the biplot output with a custom axis (no error, but the qzv doesnt load on QIIME2 View).