I followed your advice but qiime does not work anymore ...
I did:
conda create -n songbird_env songbird "pandas>=0.18.0,<1" -c conda-forge
I copy and paste some important/interesting pieces:
Remove existing environment (y/[n])? y
==> WARNING: A newer version of conda exists. <==
current version: 4.8.2
latest version: 4.8.3
tensorboard conda-forge/osx-64::tensorboard-1.15.0-py37_0
tensorflow pkgs/main/osx-64::tensorflow-1.15.0-mkl_py37hb249377_0
tensorflow-base pkgs/main/osx-64::tensorflow-base-1.15.0-mkl_py37h032239d_0
tensorflow-estima~ pkgs/main/noarch::tensorflow-estimator-1.15.1-pyh2649769_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
pandas-0.25.3 | 10.3 MB | ################################################################################################################################################## | 100%
importlib_metadata-1 | 3 KB | ################################################################################################################################################## | 100%
tensorflow-base-1.15 | 75.8 MB | ################################################################################################################################################## | 100%
songbird-1.0.2 | 27 KB | ################################################################################################################################################## | 100%
setuptools-46.1.3 | 636 KB | ################################################################################################################################################## | 100%
tensorflow-1.15.0 | 4 KB | ################################################################################################################################################## | 100%
importlib-metadata-1 | 42 KB | ################################################################################################################################################## | 100%
wcwidth-0.1.9 | 20 KB | ################################################################################################################################################## | 100%
prompt-toolkit-3.0.5 | 232 KB | ################################################################################################################################################## | 100%
numpy-1.18.1 | 5.1 MB | ################################################################################################################################################## | 100%
tensorboard-1.15.0 | 3.8 MB | ################################################################################################################################################## | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
then I did:
conda activate songbird_env
conda activate qiime2-2020.2
QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Traceback (most recent call last):
File "/Users/uli/miniconda3/envs/qiime2-2020.2/bin/qiime", line 11, in <module>
sys.exit(qiime())
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/click/core.py", line 764, in __call__
return self.main(*args, **kwargs)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/click/core.py", line 716, in main
with self.make_context(prog_name, args, **extra) as ctx:
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/click/core.py", line 641, in make_context
self.parse_args(ctx, args)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/click/command.py", line 43, in parse_args
return super().parse_args(ctx, args)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/click/core.py", line 1086, in parse_args
echo(ctx.get_help(), color=ctx.color)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/click/core.py", line 516, in get_help
return self.command.get_help(self)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/click/core.py", line 879, in get_help
self.format_help(ctx, formatter)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/click/core.py", line 898, in format_help
self.format_options(ctx, formatter)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/click/command.py", line 157, in format_options
for subcommand in self.list_commands(ctx):
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/commands.py", line 92, in list_commands
plugins = sorted(self._plugin_lookup)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/commands.py", line 76, in _plugin_lookup
import q2cli.core.cache
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/core/cache.py", line 404, in <module>
CACHE = DeploymentCache()
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/core/cache.py", line 61, in __init__
self._state = self._get_cached_state(refresh=refresh)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/core/cache.py", line 107, in _get_cached_state
self._cache_current_state(current_requirements)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/core/cache.py", line 200, in _cache_current_state
state = self._get_current_state()
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/q2cli/core/cache.py", line 238, in _get_current_state
plugin_manager = qiime2.sdk.PluginManager()
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/qiime2/sdk/plugin_manager.py", line 54, in __new__
self._init(add_plugins=add_plugins)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/qiime2/sdk/plugin_manager.py", line 81, in _init
plugin = entry_point.load()
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2444, in load
self.require(*args, **kwargs)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2467, in require
items = working_set.resolve(reqs, env, installer, extras=self.extras)
File "/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages/pkg_resources/__init__.py", line 792, in resolve
raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.VersionConflict: (tensorflow 1.15.0 (/Users/uli/miniconda3/envs/qiime2-2020.2/lib/python3.6/site-packages), Requirement.parse('tensorflow<2,>=1.15.2'))
(qiime2-2020.2) Ulis-MacBook-Pro:redsea uli$