Phylogenetic tree with noisy reads

[thermokarst]

Hey there @MaestSi! How many threads are you specifying in this script? You can trade in some speed for more RAM.

@MaestSi

Use an alternative method (if any exist) that might reduce the memory usage.

I would suggest looking into this, there are a few tree-building options in q2-phylogeny:

phylogeny — QIIME 2 2019.7.0 documentation

There is a good community tutorial, here:

Q2-phylogeny: Community Tutorial

This community tutorial has been migrated to our official documentation. Please refer to that tutorial instead. Click to see original community tutorial