Phylogenetic tree with noisy reads

[thermokarst]

Hey there @MaestSi! How many threads are you specifying in this script? You can trade in some speed for more RAM.

@MaestSi

Use an alternative method (if any exist) that might reduce the memory usage.

I would suggest looking into this, there are a few tree-building options in q2-phylogeny:

https://docs.qiime2.org/2019.7/plugins/available/phylogeny/

There is a good community tutorial, here:

Q2-phylogeny: Community Tutorial

This community tutorial has been migrated to our official documentation. Please refer to that tutorial instead.

Click to see original community tutorial

Note: before we start the tutorial below, please make sure you've read through the <a href="https://docs.qiime2.org/2018.11/tutorials/overview/">QIIME 2 Overview</a> documentation and have at least worked through some of the other <a href="https://docs.qiime2.org/2018.11/tutorials/">Tutorials</a>. …