phylogenetic transformation of qiime2 derived OTU dataset

General Discussion
1

Hello Qiime2 community,

I'm trying to use the OTU table for further study but before that, I want to perform a phylogenetic transformation of the OTU table. Is there any way to convert it directly?

Best,
Ishtiak

2

Hi @Md_Ishtiak_Rashid,

If you have your representative sequences, you can construct a phylogeny by using one of several approaches outlined here, i.e. de novo or fragment-insertion based approaches.

We also have a few YouTube videos on the subject:

-Mike

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