Permission error-hoc

User Support
1

Hi
I am running qiime in hpc with pbs script, I got error as

Traceback (most recent call last):
File "/home/dell_emc/easybuild/software/QIIME2/2023.5/lib/python3.8/site-packages/q2cli/commands.py", line 473, in call
results = action(**arguments)
File "", line 2, in align_to_tree_mafft_fasttree
File "/home/dell_emc/easybuild/software/QIIME2/2023.5/lib/python3.8/site-packages/qiime2/sdk/action.py", line 411, in parsl_wrapper
setup_parallel()
File "/home/dell_emc/easybuild/software/QIIME2/2023.5/lib/python3.8/site-packages/qiime2/sdk/parallel_config.py", line 69, in setup_parallel
config_fp = _get_vendored_config()
File "/home/dell_emc/easybuild/software/QIIME2/2023.5/lib/python3.8/site-packages/qiime2/sdk/parallel_config.py", line 148, in _get_vendored_config
with open(VENDORED_FP, 'w') as fh:
PermissionError: [Errno 13] Permission denied: '/home/dell_emc/easybuild/software/QIIME2/2023.5/etc/qiime2_config.toml'

Thank you for your time and suggestion

2
3

Hi @kulandai1,

This issue is related to the permissions that you have on your HPC. There's not much we can do about this on our end, as this is related to your specific machine permissions. I'd recommend reaching out to your HPC admin/ITS team to see what permissions can be adjusted in order for you to run this script.

Cheers :lizard:

1 Like
4
5

Thank you for your reply

1 Like
7

Hello @kulandai1

There may be a work around for the issue you are experiencing. Can you please post the full command you ran that caused this issue here.

Thank you.

8

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.