# PacBio whole 16S amplification - Can QIMME2 be used

**URL:** https://forum.qiime2.org/t/pacbio-whole-16s-amplification-can-qimme2-be-used/22768
**Category:** User Support
**Created:** [April 14, 2022, 12:44am UTC](https://forum.qiime2.org/t/pacbio-whole-16s-amplification-can-qimme2-be-used/22768 "2022-04-14T00:44:55Z")
**Posts on this page:** 4
**Page:** 1

<div class="post-metadata">

### Author: ![rr220](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/r/45deac/32.png) [@rr220](https://forum.qiime2.org/u/rr220)
#### Post date: [April 14, 2022, 12:44am UTC](https://forum.qiime2.org/t/pacbio-whole-16s-amplification-can-qimme2-be-used/22768/1 "2022-04-14T00:44:55Z")

</div>

Hi,

I have used PacBio sequencing to amplify whole 16S gene for my metagenomics project. I have obtained the FASQ files for this project. My question is that can I use QIIME2 as a pipeline to run this dataset? Or i need to use other pipeine.

Best,  
RR

---

<div class="post-metadata">

### Author: ![colinbrislawn](https://forum.qiime2.org/user_avatar/forum.qiime2.org/colinbrislawn/32/6221_2.png) [@colinbrislawn](https://forum.qiime2.org/u/colinbrislawn)
#### Post date: [April 14, 2022, 12:58pm UTC](https://forum.qiime2.org/t/pacbio-whole-16s-amplification-can-qimme2-be-used/22768/2 "2022-04-14T12:58:12Z")

</div>

Good morning,

Yes, q2-dada now supports `denoise-ccs`. Check out the docs here:  
[https://docs.qiime2.org/2022.2/plugins/available/dada2/denoise-ccs/](https://docs.qiime2.org/2022.2/plugins/available/dada2/denoise-ccs/)

Let us know if you have any questions about using this pipeline.

---

<div class="post-metadata">

### Author: ![rr220](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/r/45deac/32.png) [@rr220](https://forum.qiime2.org/u/rr220)
#### Post date: [April 14, 2022, 6:34pm UTC](https://forum.qiime2.org/t/pacbio-whole-16s-amplification-can-qimme2-be-used/22768/3 "2022-04-14T18:34:57Z")

</div>

Thank you collin, I will try this.

---

<div class="post-metadata">

### Author: ![system](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/2/1/21af5fe23cb6f4579467c66a9ed94e55274ca7bd.svg) [@system](https://forum.qiime2.org/u/system)
#### Post date: [May 16, 2022, 12:35am UTC](https://forum.qiime2.org/t/pacbio-whole-16s-amplification-can-qimme2-be-used/22768/4 "2022-05-16T00:35:03Z")

</div>

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.
