Hi all,
My question related to the different ways that taxonomy can be written for OTUs that cannot be classified to genus or species level.
The output below was generated by assigned taxonomy to Deblurred sOTUs using feature-classifier classify-sklearn
and the pretrained gg-13-8-99-515-806-nb-classifier.qza
model.
Could somebody please shine some light on why the taxonomy name format is different between the two sOTUs? My assumption is that one is because the classifier cannot classify to a lower rank based on limited resolution in the V4 region, and the other is because the taxonomy wasn't provided below family level when the classifier was train?
My questions are:
- Is that assumption correct?
- If correct, then which is which?
- If incorrect, then what is the difference?
Thank you in advance for any insight,
Calum
sOTU_ID | Taxon |
---|---|
sOTU_22997 | k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae |
sOTU_37411 | k__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__ |