OTU table creating

I am trying to get the whole OTU table out of the QIIME 2 but so far I could not find anything to help me . I would appreciate any suggestion.

Best Regards,

Leili

Hello Leili,

Have you tried the exporting data tutorial? Does that give you the data you want?

Colin

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Once extracted you can convert to tsv using something like this.

biom convert -i ExportedFeatureTable/feature-table.biom -o ExportedFeatureTable/Table.tsv --to-tsv
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