OTU table creating

I am trying to get the whole OTU table out of the QIIME 2 but so far I could not find anything to help me . I would appreciate any suggestion.

Best Regards,


Hello Leili,

Have you tried the exporting data tutorial? Does that give you the data you want?


1 Like

Once extracted you can convert to tsv using something like this.

biom convert -i ExportedFeatureTable/feature-table.biom -o ExportedFeatureTable/Table.tsv --to-tsv

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.