I’m using the following command for permanova test using bray curtis distance matrix
qiime diversity beta-group-significance
I get the p-values in a table, however, no box and whisker plots are shown. I was wondering why this is the case?
Hi @Parix, can you share the QZV or a screenshot? Thanks!
Yes, here is the qzv file bray-curtis-diet-treatment-significance-permanova.qzv (394.9 KB)
This issue only happens when there are more than two groups to be compared, otherwise box and whisker plots are shown in case of two groups.
Hi @Parix - I think the plots aren’t showing up because your metadata values include plus signs (
+), which are causing the links to the figures to break. If you remove the plus signs you should be able to re-run this command. Let us know how it goes!