Nested LME and Beta group significance

Hi, I’m trying to run LME and Beta group significance on my data. I want to nest my categories. Is there a way to do this using Qiime2? Thanks.

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Hello Stephanie,

For my own notes, here are the two plugins you mention:

Looks like the LME regression can take formulas according to this gneiss page. And hopefully these formulas could be nested with an input like:
--p-formula A + A:B
In which the output depends on A and also on B nested within A.

Beta-group-significance does not appear to support these formulas or nested tests.



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