I had samples from different run (Two), after the merge I had analyze my samples with QIIME2 and I noted that some samples had the same percentage of taxa…I think that was a problem… Can anyone suggest me what probably was happen and what I should do?
Thanks a lot
Without code or sample outputs it is a bit of a guessing game on this end — it could be that they are simply the same percentage, or, maybe you had a bookkeeping issue. I am assuming you are looking at the
taxa barplot viz? If so, can you please share that? If you don’t want to make it public you can DM me a download link for it. Thanks!
this is taxa bar plots...
Hey there @rparadiso! Thanks for sharing, but, can you send the QZV? That contains the decentralized provenance to allow us to dig in deeper into the workflow. Thanks!
I checked my metadata file and I had a problem due to copy and paste…
so I solved.
Thanks for your help!
taxa_barplots_no_Unassigned.qzv (1.8 MB)
this is my new taxa bar plots. In which way Can I remove the Bacteria from the plots (the blue in the pictures)?
See this tutorial. In your case, see the 3rd example.
is there a way to get the percentages of each taxa for a single sample (e.g. in execel)?
thanks for your help!
collapse on taxonomy using
qiime taxa collapse and convert your feature table to relative frequency with
qiime feature-table relative-frequency.