Hello everyone. I am a new user here and I am having a lot of trouble importing files into Qiime 2 even after following the directions from the importing tutorial. I am using qiime2-2020.2 via VirtualBox, and below is my code:
qiimetools import --type ‘SampleData[PairedEndSequencesWithQuality]’ --input-path ‘/tmp/VirtualBox Dropped Files/2020-05-23T16:42:04.085789000Z/all_raw_data’ all_raw_data/ --input-format CasavaOneEightSingleLanePerSampleDirFmt --output-path demux-paired-end.qza
The terminal then spits out:
There was a problem importing /tmp/VirtualBox Dropped Files/2020-05-23T16:42:04.085789000Z/all_raw_data:
Missing one or more files for CasavaOneEightSingleLanePerSampleDirFmt: ‘.+_.+_L[0-9][0-9][0-9]_R_001\.fastq\.gz’
I’ve included screenshots of the folder my file is in and what the files look like. Thank you and I appreciate all of your help.
P.S. Is there a way to copy and paste between the VirtualBox Qiime2 terminal and your computer in general? It seems like I can’t copy and paste the code from the terminal to here and have to manually copy it.