I am working in meta-analysis to find the geographical and phylogenetic variation of gut flora. For this I took 6 study data with different primer set, I had preformed the DADA2, Taxonomy and core diversity separately, and also i have completed the q2-fragment insertion and filter the table with insertion-tree. From here I didn’t known what to do. Either i have do go with separate taxonomy file or with q2-fragment insertion.
If i want to proceed with q2-fragment for diversity, taxonomy and core-diversity, what i have do .
Please suggest me with workflow
Thank you for your valuable