Hello everyone,
Is there a command for merging seqs.fna files from separate sequencing runs into a single seqs.fna file.
I have three separate seqs.fna files (generated from three separate Illumina sequencing runs) and I need to merge them before I can start using the QIIME pipeline.
I am new to QIIME2, any help is appreciated!
Hey there @thextramile!
I think the right way to go might be to import the three seqs.fna files then dereplicate each one individually (so, this section, three times). Then, you will have three FeatureTable[Frequency] artifacts and three FeatureData[Sequence] artifacts. Then, you can merge the three tables, then merge the three seqs. Check out the FMT tutorial for an example of merging. Easy peasy!
Hope that helps - keep us posted! 
This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.