After running the following rescript command:
qiime rescript evaluate-cross-validate --verbose \ --i-sequences input_seqs.qza \ --i-taxonomy input_taxa.qza \ --p-reads-per-batch 4000 \ --p-n-jobs 4 \ --output-dir CVoutput
I received this warning:
UserWarning: The lists of input taxonomies and labels are different lengths. Additional taxonomies will be labeled numerically by their order in the inputs. Note that if these numbers match existing labels, those data will be grouped in the visualization. warnings.warn(msg, UserWarning)
I had thought that perhaps the number of features in the
input_seqs.qza file were different from the number of features in the
input_taxa.qza file. This isn’t the case - they are the same length. Perhaps this warning is concerned with the number of features in expected/observed output .qza files? What would cause such an issue, if that’s the case?
Thanks for your help with the detective work !