Making a count of the OTUs of my data.

Adbeel · October 1, 2019, 7:44pm

Hello everyone

It Is possible to make a document or file that include the number of different OTUs present in my samples?

I have been working in that, and I only can get a classic OTU table like this.

sample 1 sample2 sample3 sample4
OTU1 10000 5656 4442 3334
OTU2 9999 1232 11142 3214
OTU3 5998 4545 30340 2321
OTU4 3099 3432 3432 2323

Thanks four your help.

Adbeel.

jwdebelius · October 1, 2019, 8:43pm

Try observed OTUs/ASVs in the qiime diversity alpha command.

Best,
Justine

Adbeel · October 2, 2019, 8:05pm

Hello Justine.

Thanks for answer. That is what i was looking for.

Regards,

Adbeel.

system · November 3, 2019, 2:05am

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