I am having some difficulty training the the feature classifier on the UNITE database (I think it’s related to not having enough RAM). I was wondering if anyone might be able to share a trained classifier using a relatively recent version of the dynamic UNITE database. Would be much appreciated!
Hey @Jake_Nash,
Do you want a classifier with all fungi? or all euks? 97%, 99%, or dynamic clustering threshold?
All recent UNITE releases contain multiple versions… and the fungi-only version is a lot smaller (meaning less memory and time required to train a classifier).
So if you only want fungi, you might be able to train the fungal database on your own. Otherwise, I do have some pre-trained classifiers I could share, but you will need to tell me exactly what version you want!
Hey thanks for the responses yall. I did end up successfully training a classifier on the dynamic UNITE database. I just had to increase the RAM allocation on my VM up to 14 gb - really slowed down my computer!
@Nohemi_G_Cortes_L Let me know if would like me to share the dynamic classifier with you