I think about starting to use QIIME2 but I couldn’t find information needed for my experiments.
- Is it possible to use long reads as an input file (16S rRNA from MinION sequencing)? If so, are the effects similar to those from Illumina sequencing?
- Is it possible to analyze and identify antibiotic resistance genes and toxins (based on nucleotide sequence)?
I don’t have any experience with QIIME2 and I would appreciate your help! Thanks!