# Lefse Cladogram and LDA

**URL:** https://forum.qiime2.org/t/lefse-cladogram-and-lda/30060
**Category:** User Support
**Created:** [April 25, 2024, 1:46pm UTC](https://forum.qiime2.org/t/lefse-cladogram-and-lda/30060 "2024-04-25T13:46:03Z")
**Posts on this page:** 3
**Page:** 1

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### Author: ![MiriamGorostidi](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/m/6de8d8/32.png) [@MiriamGorostidi](https://forum.qiime2.org/u/MiriamGorostidi)
#### Post date: [April 25, 2024, 1:46pm UTC](https://forum.qiime2.org/t/lefse-cladogram-and-lda/30060/1 "2024-04-25T13:46:03Z")

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Hii!

I'm trying to include the Lefse Cladogram and LDA analysis to my pipeline once I have performed the taxonomic classification with qiime2. I've been checking different posts about this topic (like [Lefse after QIIME2 - #7 by ebolyen](https://forum.qiime2.org/t/lefse-after-qiime2/4496/7) or [LEfSe after QIIME2 to test at all taxonomic levels - #3 by sbslee](https://forum.qiime2.org/t/lefse-after-qiime2-to-test-at-all-taxonomic-levels/15462/3?page=2)), but they are "quite old" and I'm facing some problems to run them... I would like to know if there is any update on this.

Or do anyone know if is it possible to run these analyses in python? I can't find a robust tutorial.

Thank you!

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### Author: ![cherman2](https://forum.qiime2.org/user_avatar/forum.qiime2.org/cherman2/32/17129_2.png) [@cherman2](https://forum.qiime2.org/u/cherman2)
#### Post date: [May 1, 2024, 3:39pm UTC](https://forum.qiime2.org/t/lefse-cladogram-and-lda/30060/2 "2024-05-01T15:39:41Z")

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Hi @MiriamGorostidi,  
I don't think there are any updates on this.  
Are you following the steps from the link? If so what are the issues you are running into?

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### Author: ![system](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/2/1/21af5fe23cb6f4579467c66a9ed94e55274ca7bd.svg) [@system](https://forum.qiime2.org/u/system)
#### Post date: [June 1, 2024, 9:39pm UTC](https://forum.qiime2.org/t/lefse-cladogram-and-lda/30060/3 "2024-06-01T21:39:47Z")

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