Jupyter notebook import qiime2 problem

11132 · July 6, 2020, 4:03am

Hi,
I use jupyter notebook to run analysis. when I import qiime2.
It said ‘ModuleNotFoundError: No module named ‘qiime2’.
Qiime2 was installed via conda and activated.

Oddant1 · July 6, 2020, 4:14pm

Hello, just to clarify, you natively installed QIIME 2 via conda, then activated the conda environment, then ran jupyter notebook in the terminal with the conda environment active?

EDIT: Also, have you run the command jupyter serverextension enable --py qiime2 --sys-prefix

11132 · July 8, 2020, 5:29am

Hi Oddant,

It works by your instructions. After running jupyter serverextension enable --py qiime2 --sys-prefix, qiime2 is extended to jupyter notebook.

Thanks a lot. Great job.

system · August 8, 2020, 10:36pm

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