Join pairs error in Vsearch

Technical Support
1

qiime vsearch join-pairs \

--i-demultiplexed-seqs paired_end/1_1_demultiplexed_seqs.qza \

--o-joined-sequences paired_end/1_3_joined_seqs.qza

Error: QIIME 2 plugin 'vsearch' has no action 'join-pairs'.

1 Like
2

In the latest versions of Qiime2 join-pairs plugin from vsearch was renamed to merge-pairs.

Best,

3 Likes
3

Thank you sir.Will work it out.

1 Like
4

I am having again problem with commands
qiime quality-filter q-score-joined --help

Error: QIIME 2 plugin 'quality-filter' has no action 'q-score-joined'

5

Hi @Tamizhini_L_21PHD017,

The command is qiime quality-filter q-score (not q-score-joined). If you're ever unsure of a plugin command name, you can always run the following (using quality-filter as an example):

qiime quality-filter --help

This will provide you with a list of all available commands from that plugin.

Hope this helps! Cheers :lizard:

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6

An off-topic reply has been split into a new topic: Can't find expected action in q2-Gneiss

Please keep replies on-topic in the future.