qiime vsearch join-pairs \
--i-demultiplexed-seqs paired_end/1_1_demultiplexed_seqs.qza \
--o-joined-sequences paired_end/1_3_joined_seqs.qza
Error: QIIME 2 plugin 'vsearch' has no action 'join-pairs'.
qiime vsearch join-pairs \
--i-demultiplexed-seqs paired_end/1_1_demultiplexed_seqs.qza \
--o-joined-sequences paired_end/1_3_joined_seqs.qza
Error: QIIME 2 plugin 'vsearch' has no action 'join-pairs'.
In the latest versions of Qiime2 join-pairs plugin from vsearch was renamed to merge-pairs.
Best,
Thank you sir.Will work it out.
I am having again problem with commands
qiime quality-filter q-score-joined --help
Error: QIIME 2 plugin 'quality-filter' has no action 'q-score-joined'
The command is qiime quality-filter q-score
(not q-score-joined
). If you're ever unsure of a plugin command name, you can always run the following (using quality-filter
as an example):
qiime quality-filter --help
This will provide you with a list of all available commands from that plugin.
Hope this helps! Cheers
An off-topic reply has been split into a new topic: Can't find expected action in q2-Gneiss
Please keep replies on-topic in the future.