ITS phylogenetic tree for diversity analysis with SEPP

Hi,

Could you please tell me when generating phylogenetic tree for diversity analysis with SEPP, whether the reference database (plz check the link below) is for 16s only? If it is, do you have any recommendation for ITS database?

https://data.qiime2.org/2020.11/common/sepp-refs-gg-13-8.qza

Thanks in advance!

Alex

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Hi @AlexL,
q2-fragment-insertion should not be used with ITS data, please see these topics for specific discussion/details:


Good luck!

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