Good point. However, when trying
conda env create -n qiime2-2021.4 --file qiime2-2021.4-py38-linux-conda.yml
Collecting package metadata: done
Solving environment: failed
q2-feature-classifier=2021.4.0 -> q2-quality-control=2021.4 -> q2-taxa=2021.4 -> nodejs[version='>=15.14.0,<16.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
q2-taxa=2021.4.0 -> nodejs[version='>=15.14.0,<16.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
nodejs=15.14.0 -> __glibc[version='>=2.17,<3.0.a0']
q2-quality-control=2021.4.0 -> q2-taxa=2021.4 -> nodejs[version='>=15.14.0,<16.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
q2-diversity=2021.4.0 -> nodejs[version='>=15.14.0,<16.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
q2-demux=2021.4.0 -> nodejs[version='>=15.14.0,<16.0a0'] -> __glibc[version='>=2.17,<3.0.a0']
Would you have any pointers?
This post seems similar:
However, in their case the issue magically disappeared and it seems magic is not in my favour right now.
@sunkilmoon - I moved this post into a new category, that way others can find it more easily.
Please run the following, and copy-and-paste the results here:
This will help us assess what is going on. Thanks!
Wonderful, thanks Matt!
active environment : None
shell level : 0
user config file : [redacted]/.condarc
populated config files : [redacted]/.condarc
conda version : 4.6.7
conda-build version : 3.10.5
python version : 3.6.5.final.0
base environment : /opt/gridware/depots/8e896c5a/el7/pkg/apps/anaconda3/5.2.0/bin (read only)
channel URLs : [new users can only put 2 links I see]
package cache : [redacted]/.conda/pkgs
envs directories : [redacted]/.conda/envs
platform : linux-64
user-agent : conda/4.6.7 requests/2.18.4 CPython/3.6.5 Linux/3.10.0-1127.19.1.el7.x86_64 centos/7.9.2009 glibc/2.17
UID:GID : 473363:10000
netrc file : None
offline mode : False
I tried conda clean --all
Thanks! That's just what I needed. Please note I edited your post to format as a code block.
There are two issues here, first, it looks like you might've skipped
the first step in the install instructions. I say that because of this:
conda version : 4.6.7
which means your
almost 2.5 years old - you'll need to update to a newer version of
conda issue, you also appear to have a very old version of
This version of
glibc is over
8 years old, which will be a problem when installing many packages via conda, including those on bioconda and conda-forge, which are all built with more recent versions of glibc. You'll have to chat with your sysadmin to reconcile that issue. This
glibc version is why you saw the
ResolvePackageNotFound errors above - this is a system-level package, not one that can installed or updated via
I wish I had better news for you - keep us posted.
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