Issue tmp space [Errno 28] tools import

Technical Support
3

Hello @colinbrislawn,

thank you for your reply. The tech support from the computing cluster were able to solve the issue with apptainer. The solution was:

salloc --mem=50G

cd /home/msalamon/projects/def-mcristes/msalamon/scripts/QIIME2_taxonomy/12SMimammal/

Appendix — Apptainer User Guide main documentation

Bind source:destination, bind current directory to /data

export APPTAINER_BIND=$PWD:/data

Set the working directory to be used for /tmp, /var/tmp and $HOME

export APPTAINER_WORKDIR=$SLURM_TMPDIR

module load StdEnv/2023 qiime2/2024.5

run with /data mounted

qiime tools import
--input-path /data/MIDORI2_UNIQ_NUC_GB261_srRNA_QIIME.fasta
--output-path /data/MIDORI2_UNIQ_NUC_GB261_srRNA_QIIME.fasta.qza
--type 'FeatureData[Sequence]'

I hope this can help other users !

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