issue importing paired en sequences

Technical Support
1

Hello!

i have a problem importing my rawreads into QIIME2

i got them in fastq.gz format and when i run the code:

qiime tools import --type 'SampleData[PairedEndSequencesWithQuality]' --input-path manifest47.tsv --input-format PairedEndFastqManifestPhred33V2 --output-path imported

i got this:

/home/kevin/miniconda3/envs/qiime2-2022.11/lib/python3.8/site-packages/q2_types/per_sample_sequences/format.py:56: FutureWarning: iteritems is deprecated and will be removed in a future version. Use .items instead.
for i, (id, fp) in enumerate(column.iteritems(), start=1):
Aborted!

how can i fix it?

2

Hello @kevin_SalOrt. First of all, what version of QIIME 2 are you running and what environment are you running it in (osx, linux, wsl, hpc cluster, etc.)? Second, can you rerun the command with the --verbose flag and post the entire output here? Thank you.

3

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