Hi everyone !
I come to you with a question regarding the
feature-classifier plugin. I would like to know if there is a way to obtain, for each ASV, let’s say the 5 most probable taxonomic assignments rather than the first one (together with confidence values). In concrete terms, I am looking for results formatted as follow:
I thought the
--p-maxhits option of consensus-vsearch could achieve it but I must be wrong since the table extracted from taxonomy.qza still displays only 1 taxon per ASV.
I am interested in a solution applicable for any of the 3 available classifiers (sklearn, consensus-blast or consensus-vsearch).
Thank you in advance for your help !