installation conflict: QIIME 2 v2024.5 and q2-greengenes2

[cherman2 (Chloe Herman)]

Hi @D_S,
I am just popping into address this question. I'll leave the rest for the expert @wasade

@D_S

was able to follow the subsequent commands easily from the output files generated until running qiime diversity core-metrics-phylogenetic. At this point, I encountered the following error:
Plugin error from diversity:
** module 'skbio.diversity.alpha' has no attribute 'sobs'**
Debug info has been saved to /tmp/qiime2-q2cli-err-t2yrma6i.log
qiime2-q2cli-err-t2yrma6i.txt (3.5 KB)

This user on the forum talks about this: [Moving Picture Tutorial] Issues when running the "core-metrics-phylogeny" pipeline in "diversity" plugin - #23 by Iyarit.

Seems like installing the greengenes2 plugin might downgrade your sklearn causing this issue.

Hope this helps!