I’m running the taxonomic classification, using a trained classifier, with the following command line:
qiime feature-classifier classify-sklearn
I’m working using an HPC (multiple node, multiple CPUs, parallel jobs), so every time I submit a job, using SLURM, I can specify number of nodes requested, CPUs, etc…
For feature-classifier classify-sklearn, there are some options as:
So, I was wondering what are the best options to set up a faster job using the HPC? How should I define those options according to the HPC?
Thanks in advance