Hi there,
I am currently running qiime2-2017.12 (because that is the most recent version available). Despite having successfully managed to import my per sample sequence files in the newest version, I’m now running into problems. I have created a manifest file and tried both csv and txt file versions. However I am getting this:
(qiime2-2017.12) [ejm3n17@green0609 ejm3n17]$ qiime tools import --type ‘[SampleData[SequencesWithQuality]’ --input-path manifest.txt --output-path /GM/single-end-demux.qza --source-format SingleEndFastqManifestPhred33
Traceback (most recent call last):
File “/local/software/miniconda/conda3/envs/qiime2-2017.12/lib/python3.5/site-packages/q2cli/tools.py”, line 116, in import_data
view_type=source_format)
File “/local/software/miniconda/conda3/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/sdk/result.py”, line 177, in import_data
type_ = qiime2.sdk.parse_type(type_)
File “/local/software/miniconda/conda3/envs/qiime2-2017.12/lib/python3.5/site-packages/qiime2/sdk/util.py”, line 62, in parse_type
type_expr = eval(string, {‘builtins’: {}}, locals_)
File “”, line 1
[SampleData[SequencesWithQuality]
^
SyntaxError: unexpected EOF while parsing
An unexpected error has occurred:
unexpected EOF while parsing (, line 1)
See above for debug info.
Thanks for any help!