Hello, I need help with a import command for merged_reads.fq The sequencing center has not provided individual fastq files for analysis. They sent data as merged_reads.fq format. How do I import this into qiime? Usually I create raw reads folder that contains FASTQ files for each sample and then …

Importing Merged_Reads.fq into Qiime2 pipeline

lizgehret (Liz Gehret) June 5, 2023, 3:31pm 2

Good question! Here's a really helpful answer from @cherman2 regarding importing pre-merged sequences, along with some resources for performing quality control on your data:

Hope this helps! Cheers

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Importing Merged_Reads.fq into Qiime2 pipeline

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