Hi Evan.
Actually it errors with a different sequence file each time I run it. Not sure if it just pulls the first sequence file randomly so that it has an issue with any and all of my sequence files. Here is the output from head of
TKnotts0517_G860_2.fastq
@M01533:390:000000000-B4NPH:1:1101:15039:1594:N:0:0/2
TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGTCTGTTAAGTCAGCGGTCAAAGCCCGGGGCTCAACCCCGGTCCGCCGTTGAAACTGGCAGTCTCGAGTTGGAGAGAAGTATGCGGAATGCGCGGTGTAGCGGTGAAATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCATGCCGGCTCCACACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACC
+
BBBAABBBBFBFGFGGEEGEGGGEGGGDHHHHHHGGGGFGHGHGHGCGFGGGFGGGGGHHHHHHHHHHH?EEEGFFHHHHGGGGGGHHHHHGGGGGGGGGGGGGGHHGHFHGHHGHHHHH0EGFHFGHFGFHHHGGGHGGGDFGFGFGGABEFFCFAFF9/BFFFFFFFFFFFFFBDAFF@B.BFFFFFFFED=DF.9.9DFFFFFA@FFFFFFFFFBBFDFBADFEEFF9ADA./.;9-@AF9;A:/.-
@M01533:390:000000000-B4NPH:1:1101:14571:1636:N:0:0/2
TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGTCTGTTAAGTCAGCGGTCAAAGCCCGGGGCTCAACCCCGGTCCGCCGTTGAAACTGGCAGTCTCGAGTTGGAGAGAAGTATGCGGAATGCGCGGTGTAGCGGTGATATGCATAGATATCGCGCAGAACTCCGATTGCGAAGGCAGCATGCCGGCTCCACACTGACGCTGAGGCACGAAAGCGTGGGTATCGAACA
+
AAABAABBBFFFGGGGCEGEGGHGEFGGGHHH5FGEFEFGHHHGHGGGGGGGGGGGGGHGGFHHHHFHH1EFGE3GFHHHGGGGBCGHHHHGGGG?DGGGGGGGGHHFHHHHHHGGHFHHCDGGFFGFGDEHHHHHGHGGFGGGFDGCG.BAFFFFA9BEFFFFFFFFFFFFFFEDFFDB=B;BFFFFFFEED@D-A?FFFFFBFF;BFFDEFFFFFFFFFFFFFFFFEFFFBFFF?AD;CDBBFD9B;>
@M01533:390:000000000-B4NPH:1:1101:13598:1664:N:0:0/2
TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGCACGGCAAGCCGGCGGTCAAATCGCGGGGCTCAACCCCGCCCAGCCGTCGGAACTGCCGGGCTAGAGTGGGCGAGAAGTGCGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACTCCGATTGCGAAGGCAGCGCACCGGCGCCCGACTGACGCTCGGGCACGAAAGCGTGGGTATCGAAAA
Thanks,
Trina