import fastqsanger sequences from galaxy

(OSIRIS DIAZ TORRES) #1

I have a problem. I have 96 samples that each have the gene 16s and 18s, in galaxy plataform I separated them (18 and 16), but the format that galaxy gave me is fastasanger, and to be able to import sequences in qiime 2 I need them to be in fastaq.gz

Ant suggestions?

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(Nicholas Bokulich) #2

sounds like galaxy has a tool to convert fastqsanger to fastq: https://biostar.usegalaxy.org/p/12151/

then you would just use gzip to convert to a gzipped archived (fastq.gz)

then you can import those files as described in the tutorials

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