i’m trying to import my fastq files using Casava 1.8 paired-end demultiplexed fastq.
some of my files are fastq.gz with the ordination you describe in qiime docs: L2S357_15_L001_R1_001.fastq.gz.
but some of my file are fastq and looks like this 709-502-NJ103-114D_R2_001.fastq.
I tried to run the command anyway but I got an error
There was a problem importing Bariatric_Fastqs/Bariatric_Fastqs:
“Unrecognized file (Bariatric_Fastqs/Bariatric_Fastqs/701508NJ8102D_R2_001.fastq) for CasavaOneEightSingleLanePerSampleDirFmt.”
I assume that the reason is the file names. do you have any suggestion how can I solve it?