Hello everyone, I am new to the forum and ran into an error trying to import a BIOM table into QIIME. I reviewed previously asked questions, but wasn’t able to find something similar hence I am asking for help. I am trying to import a BIOM table into QIIME2 using the command line interface. The code is below. I receive an error that I am not sure how to solve. I reviewed the sample BIOM table from the tutorials and the format appears the same, yet I get an error. Any help would be appreciated. Thanks!
Using QIIME2-2019.7 natively installed on macOS Catalina
##import BIOM file
qiime tools import
–input-path RISK_all_samples.biom
–type "FeatureTable[Frequency]
–input-format BIOMV100Format
–output-path /Desktop/output/
##BIOM file header information
{“id”: “None”,“format”: “Biological Observation Matrix 1.0.0”,“format_url”: “http://biom-format.org”,“type”: “OTU table”,“generated_by”: “BIOM-Format 1.3.1”,“date”: “2016-11-23T05:05:35.155933”,“matrix_type”: “sparse”,“matrix_element_type”: “float”,“shape”: [2064, 929],“data”:
##error message
An unexpected error has occurred:
’FeatureTable[Frequency] --input-format BIOMV100Format --output-path /Desktop/output\nqiime tools import --input-path RISK_all_samples.biom --type FeatureTable[Frequency]’ could not be parsed, it may not be a QIIME 2 type or it may not be an atomic type. Use ast_to_type instead.