Hi,
I’m trying to import biom table from Qiime1 and I got an error:
ValueError: Failed to sniff InPath('/Volumes/MyBookDuo/Seth_filtered_from_christy/Open_OTU_GG_R1/otu_table_mc2_w_tax_no_pynast_failures.biom') as BIOMV100Format. There may be a problem with the sniffer.
Hi @latild! I suspect your .biom file is in BIOM v2.1 format, but QIIME is expecting BIOM v1.0 format. You can tell QIIME about the correct format with --source-format BIOMV210Format. Can you give that a try?
Great, glad to hear it worked! I created an issue to add an example and clarify this in our importing data tutorial (this will be live when we have our next release).