I want to know about otu table mc2 w no_pynast failures.biom file please help me!

Hello, Guys

I really wanna know about this

I want to know about “otu_table_mc2_w_no_pynast_failures.biom” file please help me!!

I know the “otu_table_mc2.biom & otu_table_mc2_w_tax.biom”

How about this one “otu_table_mc2_w_no_pynast_failures.biom”

I thought that “otu_table_mc2_w_tax.biom” minus pynast failures

is that right?

And I have one more question

If I use silva database, Do not need to use pynast?

because pynast is base on the Greengene.

If you have know about 2 question plz do not hesitate to reply me!!

thank you

Hi @JoeyKim,

I’ve moved this topic to “Other Bioinformatics Tools” since it relates to PyNAST.
The QIIME 2 team focuses more on QIIME 2 support, but if you were to elaborate a bit on your question and what you are trying to accomplish, perhaps someone else on the forum can assist. :slight_smile:


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