I have an error message in denoise-paired commands

[ebolyen (Evan Bolyen)]

@ebolyen

However it looks like the code that is responsible for handling failure (by capturing the logs) has failed. Ironically your denoise-paired command didn’t fail. Rather it looks like your computer’s temporary directory was cleared out between starting the denoise-paired command and it finishing. So when q2cli went to clean up its mess, it couldn’t find the file and produced what you see here.

What is definitely a bummer is that it also looks like q2cli did not save any of your results after the command finished because it was too caught up in its missing log file.

This particular situation has been fixed in QIIME 2 2018.2.

While we don't have a solution for preventing files from disappearing after 3 days on OS X, we did just change q2cli to not worry about it's missing log file if it can't find it.