Hello! Thank you for your reply. Due to the time difference, I am willing to spoof you for being slower. Sorry! The following is the code information
(qiime2-2023.9) zhang_chao 08:39:30 ~/qiime2/test/mp
$ qiime diversity core-metrics-phylogenetic \
> --i-phylogeny rooted-tree.qza \
> --i-table table.qza \
> --p-sampling-depth 1103 \
> --m-metadata-file sample-metadata.tsv \
> --output-dir core-metrics-results \
> --verbose
Running external command line application. This may print messages to stdout and/or stderr.
The command being run is below. This command cannot be manually re-run as it will depend on temporary files that no longer exist.
Command:
faithpd -i /tmp/qiime2/zhang_chao/data/7e26fa27-228d-4058-b087-fd74caee89e7/data/feature-table.biom -t /tmp/qiime2/zhang_chao/data/efd5331a-8cad-4464-b567-085caa2ade33/data/tree.nwk -o /tmp/q2-AlphaDiversityFormat-50k_jrf9
Running external command line application. This may print messages to stdout and/or stderr.
The command being run is below. This command cannot be manually re-run as it will depend on temporary files that no longer exist.
Command:
ssu -i /tmp/qiime2/zhang_chao/data/7e26fa27-228d-4058-b087-fd74caee89e7/data/feature-table.biom -t /tmp/qiime2/zhang_chao/data/efd5331a-8cad-4464-b567-085caa2ade33/data/tree.nwk -m unweighted -o /tmp/q2-LSMatFormat-9au4ecps
Failing in Thread:0
call to cuInit returned error 804: Other
Traceback (most recent call last):
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2cli/commands.py", line 520, in __call__
results = self._execute_action(
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2cli/commands.py", line 586, in _execute_action
results = action(**arguments)
File "<decorator-gen-189>", line 2, in core_metrics_phylogenetic
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/qiime2/sdk/action.py", line 342, in bound_callable
outputs = self._callable_executor_(
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/qiime2/sdk/action.py", line 647, in _callable_executor_
outputs = self._callable(scope.ctx, **view_args)
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2_diversity/_core_metrics.py", line 66, in core_metrics_phylogenetic
dms += unweighted_unifrac(table=cr.rarefied_table, phylogeny=phylogeny,
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/qiime2/sdk/context.py", line 140, in deferred_action
return action_obj._bind(
File "<decorator-gen-711>", line 2, in unweighted_unifrac
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/qiime2/sdk/action.py", line 342, in bound_callable
outputs = self._callable_executor_(
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/qiime2/sdk/action.py", line 566, in _callable_executor_
output_views = self._callable(**view_args)
File "<decorator-gen-143>", line 2, in unweighted_unifrac
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 69, in _disallow_empty_tables
return wrapped_function(*args, **kwargs)
File "<decorator-gen-142>", line 2, in unweighted_unifrac
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 112, in _validate_requested_cpus return wrapped_function(*bound_arguments.args, **bound_arguments.kwargs)
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2_diversity_lib/beta.py", line 221, in unweighted_unifrac
_omp_cmd_wrapper(threads, cmd)
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 128, in _omp_cmd_wrapper
return _run_external_cmd(cmd, verbose=verbose, env=env)
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/site-packages/q2_diversity_lib/_util.py", line 122, in _run_external_cmd
return subprocess.run(cmd, check=True, env=env)
File "/titan/zhang_chao/anaconda3/envs/qiime2-2023.9/lib/python3.8/subprocess.py", line 516, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['ssu', '-i', '/tmp/qiime2/zhang_chao/data/7e26fa27-228d-4058-b087-fd74caee89e7/data/feature-table.biom', '-t', '/tmp/qiime2/zhang_chao/data/efd5331a-8cad-4464-b567-085caa2ade33/data/tree.nwk', '-m', 'unweighted', '-o', '/tmp/q2-LSMatFormat-9au4ecps']' returned non-zero exit status 1.
Plugin error from diversity:
Command '['ssu', '-i', '/tmp/qiime2/zhang_chao/data/7e26fa27-228d-4058-b087-fd74caee89e7/data/feature-table.biom', '-t', '/tmp/qiime2/zhang_chao/data/efd5331a-8cad-4464-b567-085caa2ade33/data/tree.nwk', '-m', 'unweighted', '-o', '/tmp/q2-LSMatFormat-9au4ecps']' returned non-zero exit status 1.
See above for debug info.