How to write/use qiime2 script for LSF (bsub) + docker set up?

Hi @MBugay,
I think our docs on docker would be helpful for you. Here is a step by step tutorial: Running The Moving Pictures Tutorial In Docker (2018.11) and here is our install guide that has a little info on running commands with docker: Installing QIIME 2 using Docker — QIIME 2 2023.2.0 documentation

Hope that helps!
:turtle:

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