Sorry for bothering you with it. I have trouble with installation.
I’ve found a tutorial for it Installing Community Plugins in Docker but I got the error below.
Firstly, I run the following:
docker run --platform linux/amd64 --rm -it --name my-custom-container quay.io/qiime2/core:2021.11 /bin/bash
conda install q2-picrust2=2021.11 -c conda-forge -c bioconda -c gavinmdouglas
qiime dev refresh-cache
Secondly, I opened another terminal:
docker ps
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
2d83a3cc8c30 quay.io/qiime2/core:2021.11 "/bin/bash" About a minute ago Up About a minute my-custom-container
sha256:941105712b44c5f910c1642d01d360b26e4b539ea1e8ff476bcdb9cdff7f21fb
Then, I checked a new image
docker images
REPOSITORY TAG IMAGE ID CREATED SIZE
thermokarst-qiime2/2021.11-with-q2-picrust2 latest 941105712b44 49 minutes ago 5.75GB
docker run --platform linux/amd64 --rm -it \
-u $(id -u):$(id -g) \
-v $(pwd):/data \
thermokarst-qiime2/2021.11-with-q2-picrust2:latest \
qiime picrust2
Error: QIIME 2 has no plugin/command named 'picrust2'.
My configuration is:
System versions
Python version: 3.8.12
QIIME 2 release: 2021.11
QIIME 2 version: 2021.11.0
q2cli version: 2021.11.0
Installed plugins
alignment: 2021.11.0
composition: 2021.11.0
cutadapt: 2021.11.0
dada2: 2021.11.0
deblur: 2021.11.0
demux: 2021.11.0
diversity: 2021.11.0
diversity-lib: 2021.11.0
emperor: 2021.11.0
feature-classifier: 2021.11.0
feature-table: 2021.11.0
fragment-insertion: 2021.11.0
gneiss: 2021.11.0
longitudinal: 2021.11.0
metadata: 2021.11.0
phylogeny: 2021.11.0
quality-control: 2021.11.0
quality-filter: 2021.11.0
sample-classifier: 2021.11.0
taxa: 2021.11.0
types: 2021.11.0
vsearch: 2021.11.0
What should I do to fix this problem? Thanks.