How to run qiime?

manojndsu · January 30, 2020, 3:52pm

Hi, I am looking to run following commands at qiime2. I have already created qiime2 environment (qiime2-2019.10). Now, I am not sure do I need any set up file of qiime in my working directory. please let me know how to run these command?

qiime diversity beta-group-significance
–i-distance-matrix metrics/unweighted_unifrac_distance_matrix.qza
–m-metadata-file sample-metadata.tsv
–m-metadata-column BodySite
–p-pairwise
–o-visualization metrics/unweighted-unifrac-bodysite-significance.qzv

ben · January 30, 2020, 4:37pm

Are you an administrator level on your user account? I am presuming you’re using a mac? Ben

manojndsu · January 30, 2020, 4:53pm

I am accessing linux server.

Francisco · January 30, 2020, 6:43pm

Did you activated the conda qiime2 enviroment?

Like: conda activate qiime2-2019.10?

ben · January 30, 2020, 7:15pm

Yes, try to activate the environment - Ben

system · March 2, 2020, 1:15am

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.