I was wondering if someone would be happy to explain how to interpret the output of beta-group-significance, particularly the pairwise boxplots.
One thing that’s really confusing me is the ‘n’ numbers under the boxplots (see below for example). Initially I assumed that it referred to the number of samples in that category, but that can’t be possible as n=216 for ‘supra’ when I know there are only 24 ‘supra’ samples and only 35 samples total in my dataset. Is ‘n’ the number of ‘distances’ measured? i.e. there were 216 distances between ‘sub’ and ‘supra’ samples?
Many thanks for any help!