Hello,
I ran Songbird stand alone (add-on was not compatible with QIIME2/2020.8) and produced differntial directories of the various models that I created, and evaluated them in TensorBoard.
Now that I would like to visualize and explore these differentials with Qurro (this add-on works in QIIME2/2020.8) I am stuck trying to import the differentials from Songbird (stand alone) into QIIME2 format.
I tried the following command:
qiime tools import
–input-path Model_Directory/
–output-path Differential.qza
–type DifferentialDirectoryFormat
…and got this error:
Traceback (most recent call last):
File “/gpfs0/export/apps/opt/QIIME2/2020.8/lib/python3.6/site-packages/q2cli/builtin/tools.py”, line 158, in import_data
view_type=input_format)
File “/gpfs0/export/apps/opt/QIIME2/2020.8/lib/python3.6/site-packages/qiime2/sdk/result.py”, line 241, in import_data
validate_level=‘max’)
File “/gpfs0/export/apps/opt/QIIME2/2020.8/lib/python3.6/site-packages/qiime2/sdk/result.py”, line 255, in _from_view
output_dir_fmt = pm.get_directory_format(type)
File “/gpfs0/export/apps/opt/QIIME2/2020.8/lib/python3.6/site-packages/qiime2/sdk/plugin_manager.py”, line 313, in get_directory_format
% semantic_type)
TypeError: Semantic type DifferentialDirectoryFormat does not have a compatible directory format.
An unexpected error has occurred:
Semantic type DifferentialDirectoryFormat does not have a compatible directory format.
See above for debug info.
SO! Now I’m not sure how to get my Songbird differentials into QIIME2 for use with Qurro. I also tried the “–type DifferentialFormat” on just the “differentials.txt” output, but got a very similar error.
Thanks so much if anyone can help with this!!!
Brett
Just one thing for reference, for anyone who gets here from google – it is possible to use Qurro outside of QIIME 2, if you’d prefer. There’s an example of this in