I followed the qiime2 commands to taxonomically affiliate seqs of marker gene (dsrB, herein) and finally obtained the phylogenetic composition via taxonomy barplots as shown below.
Hello!
You can find such information in the taxonomy.qza file. One way is to visualize it as a .qzv file and open it in the browser or you can export it as a .tsv file and check it there.
For the phylogeny, I think, you will need to manipulate it outside of the qiime2 (or I didn't catch your question).
There is no phylogeny associated with taxonomy assignment. Quite often phylogeny and taxonomy do not match one other. If you'd like to make a phylogeny please see the Phylogenetic inference tutorial.
@baehsung, checkout out our latest phylogenetics video, by yours truly. The later part of the video (at ~9 minutes and 22 seconds) provides a simple example on how to use empress.