How to get species level classification of only first 2 stages of Qiime analyzed sequenced data?

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Hello Daniel,

So close! The --p-where command needs a specific syntax and I bet that will fix your command.

There is a great example in this post, which is a great example:

  --p-where "BodySite='gut' AND Year='2008' AND Subject='subject-1'"

For your data, it might look like this:

--p-where "[#SampleID]='ww1cDNA' OR [#SampleID]='ww2cDNA'"

EDIT: I've updated the command you could try on your data. Let me know how it works!

Colin

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