I would like to know the exact taxonomic composition of one of my samples. I mean I would like to know, for example at genus level, how many sequences of that sample are assigned to each identified genera. I tried to export that information from the taxa bar plot but it’s impossible to read the information (the taxonomy was obtained through Greengenes).
Thanks for helping
You might be looking for taxa collapse which will give you a new feature-table collapsed to a taxonomic rank (say genus). You can then export that and convert it to TSV via
biom convert ... --to-tsv.
Is that roughly what you are looking to do?
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