Hello,
Can I convert and .txt mapping file to a fastq.gz for my barcodes? Samples are multiplexed and I am trying to use the EMPPairedEndSequences pipeline in the Atacama tutorial to demultiplex. I have sequences in fastq.gz format.
Headers in current mapping file are:
#SampleID BarcodeSequence LinkerPrimerSequence ForwardPrimer ForwardPrimerRevComp ReversePrimer ReversePrimerRevComp Run Amplicon Description
Thanks!