How to convert --o-denoising-stats file.qza to file.qzv from dada2 denoise-paired?

ylor · July 27, 2018, 8:20pm

Hello,

What would be the correct qiime command to use in order to visualize the denoising stats from running dada2 denoise-paired (to convert it from qza t o qzv)? I am not sure what to use and I can’t seem to find something similar to qiime deblur visualize-stats (https://docs.qiime2.org/2017.12/plugins/available/deblur/visualize-stats/?highlight=visualize).

I have tried qiime feature-table summarize, but that does not work.

Suggestions or pointing in the right direction would be greatly appreciated.

Thanks!

Mehrbod_Estaki · July 27, 2018, 8:32pm

qiime metadata tabulate \
  --m-input-file stats-dada2.qza \
  --o-visualization stats-dada2.qzv

ylor · July 30, 2018, 11:51am

Thank you @Mehrbod_Estaki! I completely missed that combing through the documents.

system · August 30, 2018, 5:51pm

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