How to build a GTDB-based phylogenetic tree using fragment-insertion method?

Hi @jjj33 ,
The topic below has some relevant discussion and links for how to generate a custom SEPP database:

As far as I know, it is a complicated process and I do not know of anyone other than the original SEPP/fragment-insertion developers who have managed to create a working SEPP reference, just so you know what you are getting yourself into...

Good luck!

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