Hi, I just start learning how to work on qiime and I have a question. I got this barplot.... I would like to know how can I make a specie table. I mean a table that contains the species in each bar.
Welcome to the forums
You can download this whole table as a CSV file, then open it in a spreadsheet program (Excel, GSheets) to make the table you want:
I'm 100% sure this answered you question... Is that CSV table what you were looking for?
thanks, but i don't want the entire list. I want to know which species are in each sample
You can filter to just specific taxa if you want.
Or you can look at just certain samples.
EDIT: If you have a specific question, let us know and we can help.
Another option for getting a species level table is the
qiime taxa collapse command. That will let you get that table while maintaining data provenance.
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